Mir-132-P1b

MirGeneDB ID

Tni-Mir-132-P1b

Family name

MIR-132 (all species)

Seed

AACAGUC

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-132-P1a Tni-Mir-132-P2a Tni-Mir-132-P2b

Orthologues

Aca-Mir-132-P1 Ami-Mir-132-P1 Bta-Mir-132-P1 Cfa-Mir-132-P1 Cmi-Mir-132-P1 Cpi-Mir-132-P1 Cpo-Mir-132-P1 Dno-Mir-132-P1 Dre-Mir-132-P1b Ete-Mir-132-P1 Gga-Mir-132-P1 Gja-Mir-132-P1 Gmo-Mir-132-P1b Hsa-Mir-132-P1 Lch-Mir-132-P1 Loc-Mir-132-P1 Mal-Mir-132-P1b Mdo-Mir-132-P1 Mml-Mir-132-P1 Mmu-Mir-132-P1 Mun-Mir-132-P1 Oan-Mir-132-P1 Ocu-Mir-132-P1 Pbv-Mir-132-P1 Pma-Mir-132-o1 Rno-Mir-132-P1 Sha-Mir-132-P1 Spt-Mir-132-P1 Sto-Mir-132-P1 Tgu-Mir-132-P1 Xtr-Mir-132-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

7: 7924414-7924476 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCUCCUCCAUCCUGCUGUCUCCAUGGCGACCGUGGCUUUAGAUUGUUACUCUUUGCAAGAGCUCCAUGGUAACAGUCUACAGCCAUGGUCGUUAGGGGCAGGUGUCAUCAGGAAAGUUAAA

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Structure

        10            20        30        40        50        60 
CUCCUCCUCCAUCCUGC----|   U  A              U            CUUUGCAA 
                     UGUC CC UGGCGACCGUGGCU UAGAUUGUUACU        \
                     ACGG GG AUUGCUGGUACCGA AUCUGACAAUGG        G
AAAUUGAAAGGACUACUGUGG^   -  -              C            UACCUCGA 
 120       110       100          90        80        70

Deep sequencing

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Comment

There are apparent multiple Dicer cuts on the 5p arm.

3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-132-P1b_5p*

mirBase accession

None

Sequence

0- ACCGUGGCUUUAGAUUGUUACU -22

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Mature sequence

Tni-Mir-132-P1b_3p

mirBase accession

None

Sequence

41- UAACAGUCUACAGCCAUGGUCG -63

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