Mir-33-P1

MirGeneDB ID

Tgu-Mir-33-P1

Family name

MIR-33 (all species)

Seed

UGCAUUG

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

Paralogues

Tgu-Mir-33-P3

Orthologues

Aae-Mir-33 Aca-Mir-33-P1 Ami-Mir-33-P1 Bge-Mir-33 Bta-Mir-33-P1 Cfa-Mir-33-P1 Cgi-Mir-33 Cin-Mir-33 Cli-Mir-33-P1 Cmi-Mir-33-P1 Cpi-Mir-33-P1 Cpo-Mir-33-P1 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P1 Dpu-Mir-33 Dre-Mir-33-P1a Dsi-Mir-33 Dya-Mir-33 Ebu-Mir-33 Efe-Mir-33 Esc-Mir-33 Ete-Mir-33-P1 Gga-Mir-33-P1 Gja-Mir-33-P1 Gmo-Mir-33-P1a Gmo-Mir-33-P1b Hsa-Mir-33-P1 Isc-Mir-33 Lch-Mir-33-P1 Lgi-Mir-33 Loc-Mir-33-P1 Mal-Mir-33-P1a Mal-Mir-33-P1b Mml-Mir-33-P1 Mun-Mir-33-P1 Npo-Mir-33 Oan-Mir-33-P1 Obi-Mir-33 Ocu-Mir-33-P1 Ovu-Mir-33 Pbv-Mir-33-P1 Pfl-Mir-33 Pma-Mir-33-o1 Pmi-Mir-33 Sko-Mir-33 Spt-Mir-33-P1 Spu-Mir-33 Sto-Mir-33-P1 Tca-Mir-33 Tni-Mir-33-P1a Tni-Mir-33-P1b Xbo-Mir-33 Xla-Mir-33-P1c Xla-Mir-33-P1d Xtr-Mir-33-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(TaeGut1_add)

14: 5834816-5834875 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGCGGGAGGUGCCCCCGACCCUCGCGGGGGUGCAUUGUAGUUGCAUUGCAUGUGUCAGACUGGGAGUGCAAUGCCCCUGCCAUGCAGCCCGGCGGGGGUCCCGCGCAGCAGCGCCUGCC

Get precursor sequence

Structure

        10          20        30        40        50         
UGGCGGGAGGUGCCCCC--|        G   G     U    UU        UGUGUCA 
                   GACCCUCGC GGG UGCAU GUAG  GCAUUGCA       G
                   CUGGGGGCG CCC ACGUA CGUC  CGUAACGU       A
CCGUCCGCGACGACGCGCC^        G   G     C    CC        GAGGGUC 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma	Ma

Mature sequence

Tgu-Mir-33-P1_5p

mirBase accession

None

Sequence

0- GUGCAUUGUAGUUGCAUUGCA -21

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Star sequence

Tgu-Mir-33-P1_3p*

mirBase accession

None

Sequence

39- CAAUGCCCCUGCCAUGCAGCC -60

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