Mir-196-P1

MirGeneDB ID

Tgu-Mir-196-P1

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-196

Paralogues

Tgu-Mir-196-P4

Orthologues

Aca-Mir-196-P1 Ami-Mir-196-P1 Bta-Mir-196-P1 Cfa-Mir-196-P1 Cin-Mir-196 Cli-Mir-196-P1 Cmi-Mir-196-P1 Cpi-Mir-196-P1 Cpo-Mir-196-P1 Dno-Mir-196-P1 Dre-Mir-196-P1a Dre-Mir-196-P1b Ete-Mir-196-P1 Gga-Mir-196-P1 Gja-Mir-196-P1 Gmo-Mir-196-P1a Gmo-Mir-196-P1b Hsa-Mir-196-P1 Lch-Mir-196-P1 Loc-Mir-196-P1 Mal-Mir-196-P1a Mal-Mir-196-P1b Mdo-Mir-196-P1 Mml-Mir-196-P1 Mmu-Mir-196-P1 Mun-Mir-196-P1 Oan-Mir-196-P1 Ocu-Mir-196-P1 Pbv-Mir-196-P1 Pma-Mir-196-o1 Rno-Mir-196-P1c Rno-Mir-196-P1d Sha-Mir-196-P1 Spt-Mir-196-P1 Sto-Mir-196-P1 Tni-Mir-196-P1a Tni-Mir-196-P1b Xla-Mir-196-P1e Xla-Mir-196-P1f Xtr-Mir-196-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(TaeGut1_add)

2: 33989168-33989226 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAAUUAGCGCCUGAGAACUGCUCUGUGGUUUAGGUAGUUUCAUGUUGUUGGGGCUCCACCUUUCUCUCUACAGCACGAAACUGCCUUAAUUACUUCAGUUGAUAUCAUCACCAGGUAUG

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Structure

        10            20        30        40         50        
UAAUUAGCGCCUGAGAA----|  CUCU      U          A      U-   GCUCC 
                     CUG    GUGGUU AGGUAGUUUC UGUUGU  GGG     A
                     GAC    CAUUAA UCCGUCAAAG ACGACA  UCU     C
GUAUGGACCACUACUAUAGUU^  UU--      U          C      UC   CUUUC 
       110       100          90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma	Ma

Mature sequence

Tgu-Mir-196-P1_5p

mirBase accession

MIMAT0025394

Sequence

0- UAGGUAGUUUCAUGUUGUUGGG -22

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Star sequence

Tgu-Mir-196-P1_3p*

mirBase accession

None

Sequence

37- CUACAGCACGAAACUGCCUUAA -59

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