| MirGeneDB ID | Tgu-Mir-1677-P6 |
|---|
| Family name |
MIR-1677 (all species) |
|---|
| Seed |
UGACUUA |
|---|
| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
|
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| Paralogues |
Tgu-Mir-1677-P1
Tgu-Mir-1677-P2
Tgu-Mir-1677-P4
Tgu-Mir-1677-P5
|
|---|
| Orthologues |
Cli-Mir-1677-P6
Cpi-Mir-1677-o6
Gga-Mir-1677-P6
|
|---|
| Node of Origin (locus) |
Neognathae
|
|---|
| Node of Origin (family) |
Diapsida
|
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Genome context
(TaeGut1_add) |
2: 85363381-85363438 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGCCUUGACUGUUAGCCUUUGGGAUGCAAACCUGCUUCCAUUUAAGUCAAUGUAAGUUUUAUCAUUGACUUAAUUGGAAGUGAGAUUGAGCCAUUGGGCAUGUGAGUGGCUUUAUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGCCUUGACUGUUAGC---| UUG AUG AC - U UAAG
CU GG CAA CU GCUUCCA UUAAGUCAAUG U
GG CC GUU GA UGAAGGU AAUUCAGUUAC U
UAUAUUUCGGUGAGUGUACG^ UUA GA- A- G U UAUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Tgu-Mir-1677-P6_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACCUGCUUCCAUUUAAGUCAAUG -23
Get sequence
|
|---|
| Mature sequence |
Tgu-Mir-1677-P6_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UUGACUUAAUUGGAAGUGAGAUU -58
Get sequence
|
|---|
