MirGeneDB 2.1
MirGeneDB ID

Tca-Mir-279-o22

Family name MIR-279 (all species)
Seed GACUAGA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-279b
Paralogues Tca-Mir-279-o21  Tca-Mir-279-o23  Tca-Mir-279-o24  Tca-Mir-279-o25 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) T. castaneum
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG5: 444013-444072 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGACAAAGCGGUAGUUAUCCUAAAGUUUUUGAUGGGUGAGGGUUUGGUGCAUGUUUUAUUUUAAUCAUGACUAGAUCCACACUCAUCCAAAAAUUUGGUGUCCUCAUCUGGAAAAAUUAC
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Structure
        10           20        30        40        50         
AGACAAAGCGGUAGUUAUC---|    G    U        A         G    UUUUA 
                      CUAAA UUUU GAUGGGUG GGGUUUGGU CAUG     U
                      GGUUU AAAA CUACUCAC CCUAGAUCA GUAC     U
CAUUAAAAAGGUCUACUCCUGU^    A    C        A         -    UAAUU 
.       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-279-o22_5p*
mirBase accessionMIMAT0019181
Sequence 
0- GAUGGGUGAGGGUUUGGUGCAUG -23
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Mature sequence

Tca-Mir-279-o22_3p
mirBase accessionMIMAT0010201
Sequence 
37- UGACUAGAUCCACACUCAUCCAA -60
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