| MirGeneDB ID | Sto-Novel-1 |
|---|
| Family name |
CHO-NOVEL-1 (all species) |
|---|
| Seed |
UUCUAAU |
|---|
| Species |
Cloudy Catshark (Scyliorhinus torazame) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cmi-Novel-1
|
|---|
| Node of Origin (locus) |
Chondrichthyes
|
|---|
| Node of Origin (family) |
Chondrichthyes
|
|---|
Genome context
(GCA_003427355_STO_add) |
BFAA01001588.1: 508224-508278 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUCUGGCUUCUCAAACAAUGUCAUAGCACCAGUGUGAUAACACUUAGAAGGGAACUAUUUAUCAUUCUAAUUGUCAUCACUCAGGUGUUGCGUCUGACUACACAACCAUUCAGCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCUGGCUUCUCAAACAAUGUCA--| AGU A C G AACU
UAGCACC GUGAU ACA UUAGAA GG \
GUUGUGG CACUA UGU AAUCUU CU A
UCGACUUACCAACACAUCAGUCUGC^ ACU C U A AUUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Sto-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGUGAUAACACUUAGAAGGG -22
Get sequence
|
|---|
| Mature sequence |
Sto-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
33- AUUCUAAUUGUCAUCACUCAGG -55
Get sequence
|
|---|
