MirGeneDB 2.1
MirGeneDB ID

Sto-Mir-92-P1c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-92-P1a  Sto-Mir-92-P1b  Sto-Mir-92-P1d  Sto-Mir-92-P2a  Sto-Mir-92-P2b  Sto-Mir-92-P2c 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Hsa-Mir-92-P1c  Isc-Mir-92  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_003427355_STO_add)		 BFAA01013767.1: 5248-5309 [+]
Precursor
(pre-Mir +30nt flank)
AGCAGUAGCAGUGCAGGCUGGUUUCUGCAUGGGUGGGGAUUUGUUGCAUUACUGGGUCUUGUGUUAACAGUAUUGCACUUGUCCCGGCCUGUGGAGGACAAAAAGACUUGACGGCAAAUGGA
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Structure
        10        20          30        40        50        60 
AGCAGUAGCAGUGCAGGCUGGU--|   G       G     UU  U   U    GGGUCUU 
                        UUCU CAUGGGU GGGAU  GU GCA UACU       \
                        AGGA GUGUCCG CCCUG  CA CGU AUGA       G
AGGUAAACGGCAGUUCAGAAAAAC^   G       G     UU  -   U    CAAUUGU 
120       110       100        90        80         70
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Sto-Mir-92-P1c_5p*
mirBase accessionNone
Sequence 
0- GGGUGGGGAUUUGUUGCAUUACU -23
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Mature sequence

Sto-Mir-92-P1c_3p
mirBase accessionNone
Sequence 
40- UAUUGCACUUGUCCCGGCCUGU -62
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