| MirGeneDB ID | Spu-Novel-3 |
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| Family name |
SPU-NOVEL-3 (all species) |
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| Seed |
AUAUGAU |
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| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. purpuratus
|
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| Node of Origin (family) |
S. purpuratus
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Genome context
(Spur_5.0) |
AAGJ06000004.1: 20050681-20050739 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGAUGACAUCAUCUAUGGGUUAAGUCCUUUUAUAUGAUCAAUGACAUAUGAGUAUAUUUACAUUCCCCAUGUGUAUUUGAUCAUAUCUAAGGCAAACCUUGUAUCAGCUCAGCAUCGAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGAUGACAUCAUCUAUG----| AA U UU UG AGUAUAUU
GGUU G CCUU AUAUGAUCAA ACAUAUG \
CCAA C GGAA UAUACUAGUU UGUGUAC U
CAGCUACGACUCGACUAUGUU^ A- - UC UA CCCUUACA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Spu-Novel-3_5p |
| mirBase accession | None |
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| Sequence |
0- UAUAUGAUCAAUGACAUAUGAG -22
Get sequence
|
|---|
| Star sequence |
Spu-Novel-3_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CAUGUGUAUUUGAUCAUAUCUA -59
Get sequence
|
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