| MirGeneDB ID | Spu-Novel-1-P2 |
|---|
| Family name |
SPU-NOVEL-1 (all species) |
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| Seed |
CGACUUC |
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| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
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| MiRBase ID |
|
|---|
| Paralogues |
Spu-Novel-1-P1
|
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| Orthologues |
|
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| Node of Origin (locus) |
S. purpuratus
|
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| Node of Origin (family) |
S. purpuratus
|
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Genome context
(Spur_5.0) |
AAGJ06000013.1: 1460047-1460109 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGAGCGAGGGACUGCACAACGGCUCAGCUGUCGACUUCCCUAGAGGGCAACAUGGAUUUCCCCAAAUGGUGUCGUUCUCGAGGGUAGUAGAUGGCUGAGCUGUUUUCAUGCAUCGCAGCAUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGAGCGAGGGACUGCAC--| G U A A UGGAUUUC
AACGGCUCAGCUGUC ACU CCCU GAGGGC ACA \
UUGUCGAGUCGGUAG UGA GGGA CUCUUG UGU C
UCUACGACGCUACGUACUU^ A U G C GGUAAACC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Spu-Novel-1-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCGACUUCCCUAGAGGGCAACA -22
Get sequence
|
|---|
| Star sequence |
Spu-Novel-1-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
41- UCGUUCUCGAGGGUAGUAGAUG -63
Get sequence
|
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