| MirGeneDB ID | Spt-Mir-190-P3 |
|---|---|
| Family name | MIR-190 (all species) |
| Seed | GAUAUGU |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-190-P1 |
| Orthologues | Aae-Mir-190 Aca-Mir-190-P3 Ami-Mir-190-P3 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bla-Mir-190 Bpl-Mir-190 Bta-Mir-190-P3 Cbr-Mir-190 Cel-Mir-190 Cfa-Mir-190-P3 Cgi-Mir-190 Cmi-Mir-190-P3 Cpi-Mir-190-P3 Cpo-Mir-190-P3 Cte-Mir-190 Dan-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dno-Mir-190-P3 Dpu-Mir-190 Dre-Mir-190-P3 Dsi-Mir-190 Dya-Mir-190 Esc-Mir-190 Ete-Mir-190-P3 Gga-Mir-190-P3 Gja-Mir-190-P3 Gmo-Mir-190-P3 Hme-Mir-190 Hsa-Mir-190-P3 Isc-Mir-190 Lch-Mir-190-P3 Mal-Mir-190-P3 Mdo-Mir-190-P3 Mml-Mir-190-P3 Mmu-Mir-190-P3 Npo-Mir-190 Oan-Mir-190-P3 Obi-Mir-190 Ocu-Mir-190-P3 Ovu-Mir-190 Pbv-Mir-190-P3 Pfl-Mir-190 Pma-Mir-190-o3 Pmi-Mir-190 Rno-Mir-190-P3 Sha-Mir-190-P3 Sko-Mir-190 Sto-Mir-190-P3 Tca-Mir-190 Tgu-Mir-190-P3 Tni-Mir-190-P3 Xbo-Mir-190 Xla-Mir-190-P3a Xla-Mir-190-P3b Xtr-Mir-190-P3 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01005523.1: 634000-634059 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUGGGCGCUGCCACCUGCCCUGCCUCUGUCUGAUAUGUUUGAUAUUAGGUUGUUAAUUGGGAAACCAACUAAAUAUCAAACAUAUUCUUACAGCGCCAGGACCCUGCCGCAGCCCUCCCCGet precursor sequence |
| Structure | 10 20 30 40 50 CUGGGCGCUGCCACCUGC-- CCU CU -| A UUAAUU CCUG CUGU G AUAUGUUUGAUAUU GGUUG \ GGAC GACA C UAUACAAACUAUAA UCAAC G CCCCUCCCGACGCCGUCCCA CGC UU U^ A CAAAGG . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-190-P3_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGAUAUGUUUGAUAUUAGGUUG -22
Get sequence
|
| Star sequence | Spt-Mir-190-P3_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- ACUAAAUAUCAAACAUAUUCUUA -60
Get sequence
|
