| MirGeneDB ID | Spt-Let-7-P2b3 |
|---|---|
| Family name | LET-7 (all species) |
| Seed | GAGGUAG |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Let-7-P1b Spt-Let-7-P1c Spt-Let-7-P1d Spt-Let-7-P2a1 Spt-Let-7-P2a2 Spt-Let-7-P2a3 Spt-Let-7-P2a4 Spt-Let-7-P2b1 Spt-Let-7-P2b2 Spt-Let-7-P2b4 Spt-Let-7-P2c1 Spt-Let-7-P2c2 Spt-Let-7-P2c3 |
| Orthologues | Aae-Let-7 Aca-Let-7-P2b3 Ami-Let-7-P2b3 Bge-Let-7 Bpl-Let-7 Bta-Let-7-P2b3 Cfa-Let-7-P2b3 Cgi-Let-7 Cpi-Let-7-P2b3 Cpo-Let-7-P2b3 Cte-Let-7 Dan-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2b3 Dpu-Let-7 Dre-Let-7-P2b3a Dsi-Let-7 Dya-Let-7 Esc-Let-7 Ete-Let-7-P2b3 Gja-Let-7-P2b3 Gmo-Let-7-P2b3a Gmo-Let-7-P2b3b Hme-Let-7 Hsa-Let-7-P2b3 Isc-Let-7 Lan-Let-7 Lgi-Let-7 Loc-Let-7-P2b3 Mal-Let-7-P2b3a Mml-Let-7-P2b3 Mmu-Let-7-P2b3 Mun-Let-7-P2b3 Npo-Let-7 Oan-Let-7-P2b3 Obi-Let-7 Ocu-Let-7-P2b3 Ovu-Let-7 Pbv-Let-7-P2b3 Pfl-Let-7 Pmi-Let-7 Rno-Let-7-P2b3 Sko-Let-7 Spu-Let-7 Sto-Let-7-P2b3 Tca-Let-7 Tni-Let-7-P2b3a Tni-Let-7-P2b3b Xbo-Let-7 Xla-Let-7-P2b3c Xla-Let-7-P2b3d Xtr-Let-7-P2b3 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01015375.1: 432788-432865 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGUUGAGUGUGAGCCUGGCCCCUGCUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUUUGUGCCCCAAUUCAGAGAUAACUAUACAACUUACUACUUUCCCUAGUGGGGGGAGAUGUUCCCGUUGGUCGUGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGUUGAGUGUGAGCCUGG--| UG U U GUGGGGUAGGGAUUUG CCCC CUGGGG GAGGUAGUAAGUUGUAU GUU \ GGGG GAUCCC UUUCAUCAUUCAACAUA CAA U UGCUGGUUGCCCUUGUAGAG^ GU - U UAGAGACUUAACCCCG 130 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Mature sequence | Spt-Let-7-P2b3_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGAGGUAGUAAGUUGUAUUGUU -22
Get sequence
|
| Star sequence | Spt-Let-7-P2b3_3p* (predicted) |
| mirBase accession | None |
| Sequence |
57- CUAUACAACUUACUACUUUCC -78
Get sequence
|
