MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-190-P22

Family name MIR-190 (all species)
Seed GAUAUGU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-756
Paralogues Sme-Mir-190-P20  Sme-Mir-190-P21 
Orthologues Aae-Mir-190  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bla-Mir-190  Bpl-Mir-190  Cbr-Mir-190  Cel-Mir-190  Cgi-Mir-190  Cte-Mir-190  Dan-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dpu-Mir-190  Dsi-Mir-190  Dya-Mir-190  Esc-Mir-190  Hme-Mir-190  Isc-Mir-190  Npo-Mir-190  Obi-Mir-190  Ovu-Mir-190  Pfl-Mir-190  Pmi-Mir-190  Sko-Mir-190  Tca-Mir-190  Xbo-Mir-190 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000125_dd_Smes_g4_125: 1007325-1007389 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCACUAUGCAGUAAAAGUUGGGAUAAAUCGAUAUGUGGUAAUUUGGAUGACAUAAUUAACUUUGUAAUCUCAUCCAUCUUAUCAUUUAUCAAAAUAUUCUGACAUGAUCCUCUUAACAUUUUU
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Structure
        10          20        30        40        50        60  
CUCCACUAUGCAGUAAAA--| UG     AAUC    U       UU       CAUAAUUAA 
                    GU  GGAUA    GAUA GUGGUAA  UGGAUGA         \
                    CA  CUUAU    CUAU UACUAUU  ACCUACU         C
UUUUUACAAUUCUCCUAGUA^ GU     AAAA    U       CU       CUAAUGUUU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-190-P22_5p
mirBase accessionMIMAT0004023
Sequence 
0- CGAUAUGUGGUAAUUUGGAUGA -22
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Star sequence

Sme-Mir-190-P22_3p*
mirBase accessionMIMAT0012127
Sequence 
43- AUCCAUCUUAUCAUUUAUCAAA -65
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