Mir-10-P3u

MirGeneDB ID

Sme-Mir-10-P3u

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-lin-4

Paralogues

Sme-Mir-10-P1s Sme-Mir-10-P1t Sme-Mir-10-P3s Sme-Mir-10-P3t

Orthologues

Aae-Mir-10-P3 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Cgi-Mir-10-P3 Cin-Mir-10-P3 Cte-Mir-10-P3 Dan-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dsi-Mir-10-P3 Dya-Mir-10-P3 Esc-Mir-10-P3 Isc-Mir-10-P3 Lan-Mir-10-P3 Lgi-Mir-10-P3 Nve-Mir-10 Obi-Mir-10-P3 Ovu-Mir-10-P3 Pmi-Mir-10-P3 Sko-Mir-10-P3 Spu-Mir-10-P3 Tca-Mir-10-P3 Xbo-Mir-10-P3

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Eumetazoa

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000076_dd_Smes_g4_76: 2511124-2511196 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUAUACUCAUUCAUUGAUCAGUUAUAAUCUCCCUGAGACCUUCGACUGUGUUUGACCAUUAAAUUAUCAGAAAUGAUUGCACAGUCGAUGAUCAUAGGGUUAAAAUAGCCGAUGUUACCUUUCACUUUUGAC

Get precursor sequence

Structure

        10          20        30        40        50        60      
UUUAUACUCAUUCAUUG--|  A     AAUCU     A  CCU          UUGACCAUUAAAU 
                   AUC GUUAU     CCCUG GA   UCGACUGUGU             \
                   UAG CGAUA     GGGAU CU   AGCUGACACG             U
CAGUUUUCACUUUCCAUUG^  C     AAAUU     A  AGU          UUAGUAAAGACUA 
 130       120       110       100        90        80        70