| MirGeneDB ID | Sha-Novel-4-P5b |
|---|
| Family name |
SHA-NOVEL-4 (all species) |
|---|
| Seed |
UUCCCAA |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Sha-Novel-4-P1a
Sha-Novel-4-P1b
Sha-Novel-4-P2
Sha-Novel-4-P3
Sha-Novel-4-P4
Sha-Novel-4-P5a
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. harrisii
|
|---|
| Node of Origin (family) |
S. harrisii
|
|---|
Genome context
(DEVIL_add) |
GL867924.1: 13729-13792 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGAAGAAGUUUAGACAUGGCAAUUGAAUCGGUGCCCAGUGUUUGAAAAAGAAAAGGAAUCCUCUUAGUCCACUUUCCCAAAACUAGGCACCGAUUCCGCUGCCAGCACCACCACUGAUAUGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUGAAGAAGUUUAGACA--| AUU C G AA AAAAGGAAUC
UGGCA GAAUCGGUGCC AGU UUUG AAAG \
ACCGU CUUAGCCACGG UCA AAAC UUUC C
CCGUAUAGUCACCACCACG^ CGC A - CC ACCUGAUUCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Sha-Novel-4-P5b_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGUGCCCAGUGUUUGAAAAAGA -22
Get sequence
|
|---|
| Mature sequence |
Sha-Novel-4-P5b_3p |
| mirBase accession | None |
|---|
| Sequence |
43- UUUCCCAAAACUAGGCACCGA -64
Get sequence
|
|---|
