Mir-181-P2b

MirGeneDB ID

Sha-Mir-181-P2b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-181-P1a Sha-Mir-181-P1b Sha-Mir-181-P1c Sha-Mir-181-P2a Sha-Mir-181-P2c

Orthologues

Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL834637.1: 2487164-2487224 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUAACUCUGAAAAUUAUAAUGUCUGCAAUAAACAUUCAUUGCUGUCGGUGGGUUUCUGAUCUUAAUCAACUCACUGAUCAAUGAAUGCAAACUGCGGAUCAAAUAAAUAAAGGAGGAAGCA

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Structure

        10        20          30        40        50        60 
CUAACUCUGAAAAUUAUAAU--|      AUAAA         CU          UUCUGAU 
                      GUCUGCA     CAUUCAUUG  GUCGGUGGGU       \
                      UAGGCGU     GUAAGUAAC  UAGUCACUCA       C
ACGAAGGAGGAAAUAAAUAAAC^      CAAAC         --          ACUAAUU 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-181-P2b_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGCUGUCGGUGGGU -23

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Star sequence

Sha-Mir-181-P2b_3p*

mirBase accession

None

Sequence

39- CUCACUGAUCAAUGAAUGCAAA -61

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