| MirGeneDB ID | Sha-Mir-1251 |
|---|
| Family name |
MIR-1251 (all species) |
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| Seed |
CUCUAGC |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-1251
Cfa-Mir-1251
Cpo-Mir-1251
Dno-Mir-1251
Ete-Mir-1251
Hsa-Mir-1251
Mdo-Mir-1251
Mml-Mir-1251
Mmu-Mir-1251
Ocu-Mir-1251
Rno-Mir-1251
|
|---|
| Node of Origin (locus) |
Theria
|
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| Node of Origin (family) |
Theria
|
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Genome context
(DEVIL_add) |
GL861598.1: 2793465-2793523 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCUCCCUCCCCUAACAGAUCAGCUAUGUAGACUCUAGCUGACUAAGGCGCUUCUCUUUCUAAAAAGAGCGCUUUACUUAGCCAGUGUAGACAUGGCCUGAUGAACAUUGGAACUACUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCUCCCUCCCCUAACAG- -| AG U A C UCUCUUU
AUCA GCUAUGU AC CU GCUGA UAAGGCGCU \
UAGU CGGUACA UG GA CGAUU AUUUCGCGA C
CUUCAUCAAGGUUACAAG C^ GA U C C GAAAAAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Mir-1251_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACUCUAGCUGACUAAGGCGCU -21
Get sequence
|
|---|
| Star sequence |
Sha-Mir-1251_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- CGCUUUACUUAGCCAGUGUAG -59
Get sequence
|
|---|
