MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-28-P1

Family name MIR-28 (all species)
Seed AGGAGCU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-28
Paralogues Rno-Mir-28-P2  Rno-Mir-28-P3 
Orthologues Bta-Mir-28-P1  Cfa-Mir-28-P1  Cpo-Mir-28-P1  Dno-Mir-28-P1  Ete-Mir-28-P1  Hsa-Mir-28-P1  Mml-Mir-28-P1  Mmu-Mir-28-P1  Ocu-Mir-28-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr11: 79380534-79380595 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAAGAAUAAUAGAGGUGGUCCCUACCCGCAAGGAGCUCACAGUCUAUUGAGUUCCUUUUCUGAUUCUCCCACUAGAUUGUGAGCUCCUGGAGGGCAGGCACUUGAACUCAUCUGAAAAGGU
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Structure
        10          20        30        40        50        60
GGAAGAAUAAUAGAGGU--|  C   A   GCA                U  AGUUCCUUU 
                   GGU CCU CCC   AGGAGCUCACAGUCUA UG         U
                   UCA GGA GGG   UCCUCGAGUGUUAGAU AC         C
UGGAAAAGUCUACUCAAGU^  C   C   AGG                C  CCUCUUAGU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-28-P1_5p
mirBase accessionMIMAT0000800
Sequence 
0- AAGGAGCUCACAGUCUAUUGAG -22
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Proposed targets microrna.org: MIMAT0000800
TargetScanVert: rno-miR-28-5p
miRDB: MIMAT0000800
Co-mature sequence

Rno-Mir-28-P1_3p
mirBase accessionMIMAT0004716
Sequence 
40- CACUAGAUUGUGAGCUCCUGGA -62
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Proposed targets microrna.org: MIMAT0004716
TargetScanVert: rno-miR-28-3p
miRDB: MIMAT0004716