| MirGeneDB ID | Rno-Mir-1962-P2 |
|---|
| Family name |
MIR-1962 (all species) |
|---|
| Seed |
GAGGCUG |
|---|
| Species |
Norway rat (Rattus norvegicus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Rno-Mir-1962-P1
|
|---|
| Orthologues |
Mmu-Mir-1962
|
|---|
| Node of Origin (locus) |
R. norvegicus
|
|---|
| Node of Origin (family) |
Muridae
|
|---|
Genome context
(rn6) |
chr1: 207848066-207848128 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUGGCAUUUGCAAACUCUCUAGUCAGUCAGAAGUCCCAUCUGUCUGCCUCUUUCUCCUUCAGUUUCCAUGGAGAGGCUGGCACUGGGACACACCAUGACUGAUGGUGCACUCCCCCACUACCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGGCAUUUGCAAACUCUCUA GAA---| UC U CUCCUUC
GUCAGUCA GUCCCA UGUC GCCUCUUU A
UAGUCAGU CAGGGU ACGG CGGAGAGG G
GCCAUCACCCCCUCACGUGG- ACCACA^ C- U UACCUUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ad |
Ad |
Br |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Co |
Co |
Co |
Co |
Dr |
Dr |
Du |
Du |
Du |
Du |
He |
He |
Hi |
Hi |
Il |
Il |
Je |
Je |
Ki |
Ki |
Ki |
Ki |
Li |
Li |
Li |
Li |
Me |
Me |
Mu |
Mu |
Mu |
Mu |
Mu |
Mu |
Mu |
Mu |
Ov |
Pa |
Pa |
St |
St |
St |
Te |
Ut |
Wh |
Br |
Fa |
He |
Ki |
La |
Li |
Li |
Lu |
Mu |
Pa |
Sk |
Sm |
Sp |
St |
Te |
Th |
| |
|
|
|---|
| Star sequence |
Rno-Mir-1962-P2_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AAGUCCCAUCUGUCUGCCUCUUU -23
Get sequence
|
|---|
| Mature sequence |
Rno-Mir-1962-P2_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
41- AGAGGCUGGCACUGGGACACAC -63
Get sequence
|
|---|
