MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-146-P1

Family name MIR-146 (all species)
Seed GAGAACU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-146b
Paralogues Rno-Mir-146-P4 
Orthologues Aca-Mir-146-P1  Ami-Mir-146-P1  Bta-Mir-146-P1  Cfa-Mir-146-P1  Cli-Mir-146-P1  Cmi-Mir-146-P1  Cpi-Mir-146-P1  Cpo-Mir-146-P1  Dno-Mir-146-P1  Dre-Mir-146-P1  Ebu-Mir-146  Ete-Mir-146-P1  Gga-Mir-146-P1  Gja-Mir-146-P1  Gmo-Mir-146-P1  Hsa-Mir-146-P1  Lch-Mir-146-P1  Loc-Mir-146-P1  Mal-Mir-146-P1  Mdo-Mir-146-P1  Mml-Mir-146-P1  Mmu-Mir-146-P1  Mun-Mir-146-P1  Oan-Mir-146-P1  Ocu-Mir-146-P1  Pbv-Mir-146-P1  Pma-Mir-146  Sha-Mir-146-P1  Spt-Mir-146-P1  Tgu-Mir-146-P1  Tni-Mir-146-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr1: 266089502-266089561 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGCUGAGAGAACUUUGGCCACCUGGCCCUGAGAACUGAAUUCCAUAGGCUGUGAACUCUAGCAGAUGCCCUAGGGACUCAGUUCUGGUGCCUGGCUGUGCUACACCAUCGAUACCAAC
Get precursor sequence
Structure
        10             20         30        40        50          
CAGGCUGAGAGAACUUU-----|    CCU   -  UG        A    AUA   UGUGAACU 
                      GGCCA   GGC CC  AGAACUGA UUCC   GGC        \
                      UCGGU   CCG GG  UCUUGACU AGGG   CCG        C
CAACCAUAGCUACCACAUCGUG^    ---   U  --        C    AUC   UAGACGAU 
.       110       100           90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-146-P1_5p
mirBase accessionMIMAT0005595
Sequence 
0- UGAGAACUGAAUUCCAUAGGCUGU -24
Get sequence
Proposed targets microrna.org: MIMAT0005595
TargetScanVert: rno-miR-146b-5p
miRDB: MIMAT0005595
Star sequence

Rno-Mir-146-P1_3p*
mirBase accessionMIMAT0017334
Sequence 
38- GCCCUAGGGACUCAGUUCUGGU -60
Get sequence
Proposed targets TargetScanVert: rno-miR-146b-3p
miRDB: MIMAT0017334