MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-138-P1

Family name MIR-138 (all species)
Seed GCUGGUG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-138-1
Paralogues Rno-Mir-138-P2 
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cfa-Mir-138-P1  Cli-Mir-138-P1  Cmi-Mir-138-P1  Cpo-Mir-138-P1  Dno-Mir-138-P1  Dre-Mir-138-P1a  Ete-Mir-138-P1  Gga-Mir-138-P1  Gja-Mir-138-P1  Gmo-Mir-138-P1a  Gmo-Mir-138-P1b  Hsa-Mir-138-P1  Lch-Mir-138-P1  Loc-Mir-138-P1  Mal-Mir-138-P1a  Mal-Mir-138-P1b  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pbv-Mir-138-P1  Pma-Mir-138-o1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Tni-Mir-138-P1a  Xla-Mir-138-P1c  Xla-Mir-138-P1d  Xtr-Mir-138-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr8: 131731748-131731808 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGAGACCUCUGGCAUGGUGUUGUGGGACAGCUGGUGUUGUGAAUCAGGCCGUUGCCAAUCAGAGAACGGCUACUUCACAACACCAGGGUCUCACUGCACUGCAGGCAUCUGGCAGCAGC
Get precursor sequence
Structure
        10          20        30        40        50        60 
UCAGAGACCUCUGGCAU--|    U       AG             UCA     UUGCCAA 
                   GGUGU GUGGGAC  CUGGUGUUGUGAA   GGCCG       \
                   UCACG CACUCUG  GACCACAACACUU   UCGGC       U
CGACGACGGUCUACGGACG^    U       G-             CA-     AAGAGAC 
 .       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-138-P1_5p
mirBase accessionMIMAT0000844
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
Proposed targets microrna.org: MIMAT0000844
TargetScanVert: rno-miR-138-5p
miRDB: MIMAT0000844
Star sequence

Rno-Mir-138-P1_3p*
mirBase accessionMIMAT0004734
Sequence 
40- GCUACUUCACAACACCAGGGU -61
Get sequence
Proposed targets microrna.org: MIMAT0004734
TargetScanVert: rno-miR-138-1-3p
miRDB: MIMAT0004734