MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-135-P1

Family name MIR-135 (all species)
Seed AUGGCUU
Species Norway rat (Rattus norvegicus)
MiRBase ID
Paralogues Rno-Mir-135-P2  Rno-Mir-135-P4 
Orthologues Aca-Mir-135-P1  Ami-Mir-135-P1  Bta-Mir-135-P1  Cfa-Mir-135-P1  Cli-Mir-135-P1  Cmi-Mir-135-P1  Cpi-Mir-135-P1  Cpo-Mir-135-P1  Dno-Mir-135-P1  Dre-Mir-135-P1  Ete-Mir-135-P1  Gga-Mir-135-P1  Gja-Mir-135-P1  Gmo-Mir-135-P1  Hsa-Mir-135-P1  Lch-Mir-135-P1  Loc-Mir-135-P1  Mal-Mir-135-P1  Mml-Mir-135-P1  Mmu-Mir-135-P1  Mun-Mir-135-P1  Oan-Mir-135-P1  Ocu-Mir-135-P1  Pbv-Mir-135-P1  Pma-Mir-135-o1  Spt-Mir-135-P1  Sto-Mir-135-P1  Tgu-Mir-135-P1  Tni-Mir-135-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(rn6)		 chr8: 114847396-114847455 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGGGACCGCCCCAGUCCUCACUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUACUAUUGCUCGCUCAUAUAGGGAUUGGAGCCGUGGCGCACGGUGAGGGUAGCCAACAGAGGGCUCU
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Structure
        10          20        30        40        50          
UCAGGGACCGCCCCAGU--|        UCU          UU            UACUAU 
                   CCUCACUGU   CUAUGGCUUU  AUUCCUAUGUGA      \
                   GGAGUGGCA   GGUGCCGAGG  UAGGGAUAUACU      U
UCUCGGGAGACAACCGAUG^        CGC          U-            CGCUCG 
.       110       100        90        80         70
Deep sequencing
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CommentBecause there is only a single read of the 3p arm the Group 2 status of this gene cannot be reliably assessed.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-135-P1_5p
mirBase accessionNone
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Rno-Mir-135-P1_3p*
mirBase accessionNone
Sequence 
38- AUAUAGGGAUUGGAGCCGUGGC -60
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