Mir-103-P1

MirGeneDB ID

Rno-Mir-103-P1

Family name

MIR-103 (all species)

Seed

GCAGCAU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-107

Paralogues

Rno-Mir-103-P2 Rno-Mir-103-P4

Orthologues

Aca-Mir-103-P1 Ami-Mir-103-P1 Bta-Mir-103-P1 Cfa-Mir-103-P1 Cli-Mir-103-P1 Cmi-Mir-103-P1 Cpi-Mir-103-P1 Cpo-Mir-103-P1 Dno-Mir-103-P1 Dre-Mir-103-P1a Dre-Mir-103-P1b Ete-Mir-103-P1 Gga-Mir-103-P1 Gja-Mir-103-P1 Hsa-Mir-103-P1 Lch-Mir-103-P1 Loc-Mir-103-P1 Mal-Mir-103-P1a Mdo-Mir-103-P1 Mml-Mir-103-P1 Mmu-Mir-103-P1 Mun-Mir-103-P1 Oan-Mir-103-P1 Ocu-Mir-103-P1 Pbv-Mir-103-P1 Pfl-Mir-103 Pma-Mir-103-o1 Pmi-Mir-103 Sha-Mir-103-P1 Sko-Mir-103 Spt-Mir-103-P1 Spu-Mir-103 Sto-Mir-103-P1 Tgu-Mir-103-P1 Tni-Mir-103-P1a Xbo-Mir-103 Xla-Mir-103-P1c Xla-Mir-103-P1d Xtr-Mir-103-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Deuterostomia

Genome context
(rn6)

chr1: 253128263-253128322 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACAAUACUGUGAUAUUCUCUCUGCUUUAAGCUUCUUUACAGUGUUGCCUUGUGGCAUGGAGUUCAAGCAGCAUUGUACAGGGCUAUCAAAGCACAGAGAGCUUGCUACAGCCAAAGCC

Get precursor sequence

Structure

        10          20        30          40        50         
CCACAAUACUGUGAUAU--     C      A--|   U  U           C   UGGCA 
                   UCUCU UGCUUU   AGCU CU UACAGUGUUGC UUG     U
                   AGAGA ACGAAA   UCGG GA AUGUUACGACG AAC     G
CCGAAACCGACAUCGUUCG     C      CUA^   -  C           -   UUGAG 
.       110       100        90         80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-103-P1_5p*

mirBase accession

MIMAT0017115

Sequence

0- AGCUUCUUUACAGUGUUGCCUUG -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-107-5p
miRDB: MIMAT0017115

Mature sequence

Rno-Mir-103-P1_3p

mirBase accession

MIMAT0000826

Sequence

37- AGCAGCAUUGUACAGGGCUAUCA -60

Get sequence

Proposed targets

microrna.org: MIMAT0000826
TargetScanVert: rno-miR-107-3p
miRDB: MIMAT0000826