MirGeneDB 2.1
MirGeneDB ID

Pma-Mir-219-o1

Family name MIR-219 (all species)
Seed GAUUGUC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-219-o2 
Orthologues Aae-Mir-219  Bfl-Mir-219  Bge-Mir-219  Bla-Mir-219  Cgi-Mir-219  Cin-Mir-219  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dpu-Mir-219  Dsi-Mir-219  Dya-Mir-219  Esc-Mir-219  Isc-Mir-219  Lan-Mir-219  Obi-Mir-219  Ovu-Mir-219  Pfl-Mir-219  Pmi-Mir-219  Sko-Mir-219  Spu-Mir-219  Tca-Mir-219  Xbo-Mir-219 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NW_022638164.1: 322376-322438 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCGCCCCCGGGAUCUAAGCCGUCGCUUCUGAUUGUCCAAACGCAAUUCUCGCUGCGCCAGUCCCCUGUGAGAAUUGUGGGUGGACAUCGGUAGCUGCGUCUCCGCCUCGUCUCCUCCACCA
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Structure
        10          20        30        40        50        60 
UGCCGCCCCCGGGAUCUA--| C   C   U     U     AA           CUGCGCC 
                    AG CGU GCU CUGAU GUCCA  CGCAAUUCUCG       A
                    UC GCG CGA GGCUA CAGGU  GUGUUAAGAGU       G
ACCACCUCCUCUGCUCCGCC^ U   U   U     -     GG           GUCCCCU 
 120       110       100        90         80        70
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-219-o1_5p
mirBase accessionNone
Sequence 
0- UGAUUGUCCAAACGCAAUUCUCG -23
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Co-mature sequence

Pma-Mir-219-o1_3p (predicted)
mirBase accessionNone
Sequence 
41- AGAAUUGUGGGUGGACAUCGGU -63
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