| MirGeneDB ID | Pma-Mir-181-P1o2 |
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| Family name |
MIR-181 (all species) |
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| Seed |
ACAUUCA |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
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| Paralogues |
Pma-Mir-181-P1o1
Pma-Mir-181-P2o1
Pma-Mir-181-P2o2
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| Orthologues |
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046118.1: 4215267-4215339 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUCAAGGCGGGGUCGAGGCGGGCCCCGUGGAACAUUCAACGCUGUCGGUGAGUUUUGUUUGAACUCCUCAUAUGAAAAUAAACCAUCGACCGUUGACUGUACCACGUGACCCGGCCGUUACCACGGCAACACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GUCAAGGCGGGGUCGAGG--| CCC A U CU A UUUGUUUGAACUC
CGGG CGUGG ACA UCAACG GUCGGUG GU C
GCCC GCACC UGU AGUUGC CAGCUAC CA U
CCACAACGGCACCAUUGCCG^ AGU A C -- - AAUAAAAGUAUAC
130 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-181-P1o2_5p |
| mirBase accession | None |
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| Sequence |
0- AACAUUCAACGCUGUCGGUGAGU -23
Get sequence
|
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| Star sequence |
Pma-Mir-181-P1o2_3p* |
| mirBase accession | None |
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| Sequence |
51- ACCAUCGACCGUUGACUGUACC -73
Get sequence
|
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