| MirGeneDB ID | Pma-Mir-142-v2 |
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| Family name |
MIR-142 (all species) |
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| Seed |
GUAGUGU |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
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| Paralogues |
Pma-Mir-142-v1
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| Orthologues |
Ebu-Mir-142-v2
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| Node of Origin (locus) |
Vertebrata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NW_022638250.1: 104351-104407 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCGCCGCCCCCAGCCACAGUGAAGCCGUCCAUAAAGUAGGAAGCACUACUGGCGCAAUGAUGCGGUGUAGUGUUUCAUACUUUAUGGACGACUGCGCUGAGAUCGACCGGACUCGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCGCCGCCCCCAGCCAC--| A C G UGGCGCAA
AGUG AG CGUCCAUAAAGUA GAAGCACUAC \
UCGC UC GCAGGUAUUUCAU CUUUGUGAUG U
CCGCUCAGGCCAGCUAGAG^ G A A UGGCGUAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Star sequence |
Pma-Mir-142-v2_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AUAAAGUAGGAAGCACUACUGG -22
Get sequence
|
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| Mature sequence |
Pma-Mir-142-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UGUAGUGUUUCAUACUUUAUGG -57
Get sequence
|
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