| MirGeneDB ID | Pfl-Mir-92-o42 |
|---|
| Family name |
MIR-92 (all species) |
|---|
| Seed |
AUUGCAC |
|---|
| Species |
Ptychodera (Ptychodera flava) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Pfl-Mir-92-o41
Pfl-Mir-92-o43
Pfl-Mir-92-o44
Pfl-Mir-92-o45
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
P. flava
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(Pfl) |
LD343282.1: 114848-114906 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGUUAUUAGGUCUCUCUGGCUCUGAUUAGAAGGUCAGGACUUGCGCAAUGUUGGUCAGACUGGCAAAUAUUGCACUCGUCCCGGCCUGCUAGUUUGGGUACUUGGCAUCGUAAGGCAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGUUAUUAGGUCUCUCUG--| U A A UUGC GGUCAG
GCUC GAUUAG AGGUC GGAC GCAAUGUU \
UGGG UUGAUC UCCGG CCUG CGUUAUAA A
UAACGGAAUGCUACGGUUCA^ U G C CUCA ACGGUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pfl-Mir-92-o42_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGUCAGGACUUGCGCAAUGUU -22
Get sequence
|
|---|
| Mature sequence |
Pfl-Mir-92-o42_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UAUUGCACUCGUCCCGGCCUGC -59
Get sequence
|
|---|
