| MirGeneDB ID | Pfl-Mir-4828-P4 |
|---|
| Family name |
MIR-4828 (all species) |
|---|
| Seed |
GUAAAUA |
|---|
| Species |
Ptychodera (Ptychodera flava) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Pfl-Mir-4828-P1
Pfl-Mir-4828-P2
Pfl-Mir-4828-P3
|
|---|
| Orthologues |
Sko-Mir-4828-P4
|
|---|
| Node of Origin (locus) |
Enteropneusta
|
|---|
| Node of Origin (family) |
Enteropneusta
|
|---|
Genome context
(Pfl) |
LD343010.1: 765234-765296 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUAUUUCCCAGAGAGAGACGGGUCACACUUCAAUCUCAUUGCGUAUUUUCAUCUGUGCUUUUUGUGCUAACAGUAAAUACCAUUGAGAUUGCAGGGUCUUCUGUCACAAGUCUUCCUCAGCUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUAUUUCCCAGAGAGAG--| UC A - U C UCAUCUGUGCUU
ACGGG AC CUU CAAUCUCA UG GUAUUU U
UGUCU UG GGA GUUAGAGU AC CAUAAA U
AUCGACUCCUUCUGAACAC^ UC - C U - UGACAAUCGUGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pfl-Mir-4828-P4_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CAAUCUCAUUGCGUAUUUUCAUC -23
Get sequence
|
|---|
| Mature sequence |
Pfl-Mir-4828-P4_3p |
| mirBase accession | None |
|---|
| Sequence |
41- AGUAAAUACCAUUGAGAUUGCA -63
Get sequence
|
|---|
