| MirGeneDB ID | Pfl-Mir-4825-P1a |
|---|
| Family name |
MIR-4825 (all species) |
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| Seed |
CACACCU |
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| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
|
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| Paralogues |
Pfl-Mir-4825-P1b
|
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| Orthologues |
Sko-Mir-4825
|
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| Node of Origin (locus) |
P. flava
|
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| Node of Origin (family) |
Enteropneusta
|
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Genome context
(Pfl) |
LD362106.1: 5121-5182 [+]
|
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Precursor
(pre-Mir +30nt flank) |
UGGCCCUGCAAAAGGUGUGAUGUUGGGUAAGGGGACAGGGAUUGGUGUGGGGGUCUCAUUUCUACCACCUCACACCUUGACCUGUCAACCUUACCCACAUUACCAUAUCAACGAUUAAGUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGCCCUGCAAAAGGUG---| U G- GAUU GUCUCAU
UGAUGU GGGUAAGG GACAGG GGUGUGGGG \
AUUACA CCCAUUCC CUGUCC CCACACUCC U
UAUGAAUUAGCAACUAUACC^ - AA AGUU ACCAUCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pfl-Mir-4825-P1a_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGGGACAGGGAUUGGUGUGGGG -22
Get sequence
|
|---|
| Mature sequence |
Pfl-Mir-4825-P1a_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UCACACCUUGACCUGUCAACCUU -62
Get sequence
|
|---|
