MirGeneDB 2.1
MirGeneDB ID

Pfl-Mir-10-P3k

Family name MIR-10 (all species)
Seed CAGGUUA
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-10-P1  Pfl-Mir-10-P2  Pfl-Mir-10-P3j1  Pfl-Mir-10-P3j2  Pfl-Mir-10-P3l 
Orthologues Aae-Mir-10-P3  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Isc-Mir-10-P3  Lan-Mir-10-P3  Lgi-Mir-10-P3  Nve-Mir-10  Obi-Mir-10-P3  Ovu-Mir-10-P3  Pmi-Mir-10-P3  Sko-Mir-10-P3  Spu-Mir-10-P3  Tca-Mir-10-P3  Xbo-Mir-10-P3 
Node of Origin (locus) P. flava
Node of Origin (family) Eumetazoa
Genome context
(Pfl)		 LD350399.1: 124091-124151 [+]
Precursor
(pre-Mir +30nt flank)
UUACCCACGAUACCCCAGUGCGCUUCUCGAUCCCUGAGACCCUAACUUUGGAUGUCAACUAUUUAAUUCACAGGUUAGUUGCUCAGGUACUGGGUGGCAUAUAUGAGCUGCAGGAAGCUUC
Get precursor sequence
Structure
        10        20          30        40         50         
UUACCCACGAUACCCCAGUGC--   U    AUC      ACC       -|   UGUCAA 
                       GCU CUCG   CCUGAG   CUAACUU UGGA      C
                       CGG GGGU   GGACUC   GAUUGGA ACUU      U
CUUCGAAGGACGUCGAGUAUAUA   U    CAU      GUU       C^   AAUUUA 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Pfl-Mir-10-P3k_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCCCUGAGACCCUAACUUUGGA -22
Get sequence
Mature sequence

Pfl-Mir-10-P3k_3p
mirBase accessionNone
Sequence 
39- ACAGGUUAGUUGCUCAGGUACU -61
Get sequence