| MirGeneDB ID | Ovu-Novel-64-v2 |
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| Family name |
OCT-NOVEL-64 (all species) |
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| Seed |
GUCCAUA |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
Ovu-Novel-64-v1
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| Orthologues |
Obi-Novel-64-v2
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| Node of Origin (locus) |
Octopus
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| Node of Origin (family) |
Octopus
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01060271.1: 21383-21438 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUCAAUCCGAAAAUGAUGUAGGAUUCGCCGUCUACUUGCGCCGUGGAUAUUGUGAUAACAAAGGAUGUCCAUAGCACACGUGGAUGGCGUCUUCUAUAUAAACGCACGUCGGAGAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUCAAUCCGAAAAUGAU--| UU U C CG GUGAU
GUAGGA CGCCGUCUAC UG GC UGGAUAUU A
UAUCUU GCGGUAGGUG AC CG ACCUGUAG A
CAGAGGCUGCACGCAAAUA^ CU C A AU GAAAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), UGUG in loop |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Star sequence |
Ovu-Novel-64-v2_5p* |
| mirBase accession | None |
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| Sequence |
0- UCUACUUGCGCCGUGGAUAUU -21
Get sequence
|
|---|
| Mature sequence |
Ovu-Novel-64-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UGUCCAUAGCACACGUGGAUG -56
Get sequence
|
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