| MirGeneDB ID | Ovu-Novel-46 |
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| Family name |
COL-NOVEL-46 (all species) |
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| Seed |
CUCCAAC |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Novel-46
Obi-Novel-46
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01074964.1: 153176-153234 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAAAGAGCGGUCUGUUUCAGCUUGGGGUUUUCUCCAACUAGUUUUCGGUACCUUGUGUUUCAUUAUGGUACCAAAGAUGAUUGGAGAGAUCCCCCACAGUUGACUUAUCAUCGAUUACU
Get precursor sequence
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| Structure | 10 20 30 40 50
GAAAGAGCGGUCUGUUUC - U-| CUA C UUGUGU
AGCU UGGGG UUUCUCCAA GUUUU GGUACC U
UUGA ACCCC AGAGAGGUU UAGAA CCAUGG U
UCAUUAGCUACUAUUCAG C CU^ AG- A UAUUAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Dicer cut -1 on both arms. This second cut on the 3p arm corresponds to the mature read in O. bimaculoides. |
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Mature sequence |
Ovu-Novel-46_5p |
| mirBase accession | None |
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| Sequence |
0- UCUCCAACUAGUUUUCGGUACCU -23
Get sequence
|
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| Star sequence |
Ovu-Novel-46_3p* |
| mirBase accession | None |
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| Sequence |
37- GUACCAAAGAUGAUUGGAGAGA -59
Get sequence
|
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