| MirGeneDB ID | Ovu-Novel-43 |
|---|
| Family name |
COL-NOVEL-43 (all species) |
|---|
| Seed |
AUCAAGA |
|---|
| Species |
Common octopus (Octopus vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Novel-43-v1
Esc-Novel-43-v2
Obi-Novel-43
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01060978.1: 387158-387218 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAAAGACUGCAACAUAAGUGUCGUGGAGGACUUUCAGCAUGAUCUUUGAGAGUAUUUUCUGCAUUCCGCUAUCAAGACCAUGGUGAGAGUCUGCCGCAACAGUAUUUUCAACUGUUUGUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAAAGACUGCAACAUAAG--| C A G A U G AUUUUC
UGU GUGG GGACUUUCA CAUG UCUU GA AGU U
ACA CGCC UCUGAGAGU GUAC AGAA CU UCG G
UCUGUUUGUCAACUUUUAUG^ A G G C - A CCUUAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut +1 on the 5p arm. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Ovu-Novel-43_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUUUCAGCAUGAUCUUUGAGAGU -23
Get sequence
|
|---|
| Mature sequence |
Ovu-Novel-43_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UAUCAAGACCAUGGUGAGAGUC -61
Get sequence
|
|---|
