| MirGeneDB ID | Ovu-Novel-3-v3 |
|---|
| Family name |
CEP-NOVEL-3 (all species) |
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| Seed |
UCGGCUG |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
Ovu-Novel-3-v1
Ovu-Novel-3-v2
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| Orthologues |
Esc-Novel-3-v3
Npo-Novel-3
Obi-Novel-3-v3
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| Node of Origin (locus) |
Cephalopoda
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| Node of Origin (family) |
Cephalopoda
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01019472.1: 106418-106478 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCCUGCCUGUGAAGUAAGGGUAGCUCCAGCCAAACACCCCGCCGGCUGAAAAGGGAAUUCUCUCACCUUGUCGGCUGACCGGUUGUUUGGUGGGUUCCACCCCAGAUUCUACUAUAUAUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCCUGCCUGUGAAGUAA-- --| U G CC C- A GGGAAUU
GGGU AGC CCA CCAAACA CCG CGGCUGA AA \
CCCA UUG GGU GGUUUGU GGC GUCGGCU UU C
UGUAUAUAUCAUCUUAGAC CC^ - - U- CA G CCACUCU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Star sequence |
Ovu-Novel-3-v3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAAACACCCCGCCGGCUGAAAA -22
Get sequence
|
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| Mature sequence |
Ovu-Novel-3-v3_3p |
| mirBase accession | None |
|---|
| Sequence |
39- GUCGGCUGACCGGUUGUUUGGU -61
Get sequence
|
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