| MirGeneDB ID | Ovu-Novel-25-v2 |
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| Family name |
COL-NOVEL-25 (all species) |
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| Seed |
UUUAAGA |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
Ovu-Novel-25-v1
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| Orthologues |
Esc-Novel-25-v2
Obi-Novel-25-v2
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01024537.1: 172295-172352 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUUUCUCAGAAGAUCGAGGACUCCUGUACCCCGUGUAACAGUUCUGAGACCUAGAAUAUAAGACGAGGUUUAAGACUGUCCCACGGGCUAAAGGAAUCUAUAUAGCAGCACGAGACCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUUUCUCAGAAGAUCGA--| C G C UA U G AGAAUA
GGA UCCU UA CCCGUG ACAGU CU AGACCU \
UCU AGGA AU GGGCAC UGUCA GA UUUGGA U
UCCAGAGCACGACGAUAUA^ A A C CC - A GCAGAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +! on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Star sequence |
Ovu-Novel-25-v2_5p* |
| mirBase accession | None |
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| Sequence |
0- CCGUGUAACAGUUCUGAGACCU -22
Get sequence
|
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| Mature sequence |
Ovu-Novel-25-v2_3p |
| mirBase accession | None |
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| Sequence |
37- GUUUAAGACUGUCCCACGGGC -58
Get sequence
|
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