| MirGeneDB ID | Ovu-Novel-18 |
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| Family name |
COL-NOVEL-18 (all species) |
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| Seed |
AGAUUCG |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Novel-18
Obi-Novel-18
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01006983.1: 197735-197792 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUAGCAGUUAAUCAUAUUCUCCAGUGUCUGUAGAUUCGAGUCCGGGUCGGAGAUGUUAUCACAGUUCUGACAGGACAUCGAACCUGCAAACCUUGGAAGAACAGUCAACAGGGACGUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUAGCAGUUAAUCAUAU- - U C A -| GG AUGUU
UC UCCAG GU UGUAG UUCGA GUCC GUCGGAG A
AG AGGUU CA ACGUC AAGCU CAGG CAGUCUU U
GUGCAGGGACAACUGACA A C A C A^ A- GACAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Mature sequence |
Ovu-Novel-18_5p |
| mirBase accession | None |
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| Sequence |
0- UAGAUUCGAGUCCGGGUCGGAG -22
Get sequence
|
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| Star sequence |
Ovu-Novel-18_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CUGACAGGACAUCGAACCUGCA -58
Get sequence
|
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