| MirGeneDB ID | Ocu-Mir-935-v1 |
|---|
| Family name |
MIR-935 (all species) |
|---|
| Seed |
AGUUACC |
|---|
| Species |
Rabbit (Oryctolagus cuniculus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ocu-Mir-935-v2
|
|---|
| Orthologues |
Bta-Mir-935-v1
Cfa-Mir-935-v1
Dno-Mir-935-v1
Hsa-Mir-935-v1
Mml-Mir-935-v1
Mmu-Mir-935-v1
Rno-Mir-935-v1
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(oryCun2_add) |
VIYN01003915.1: 22406-22465 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGCUCAAGGCCGGCGGGGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCUAGCUCCCGCUCCAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGCUCAAGGCCGGCGG---| C G A CCC C CCAUCC
GGG GCGG CGGC GUGGCGGGAGCGG CU GG U
CCC CGCC GCCG CAUCGCCUUCGCC GA CC C
CGACCUCGCCCUCGAUCUCG^ U - C AUU C GUCUGC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Not in assembly but in trace archive. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ocu-Mir-935-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGGCGGGAGCGGCCCCUCGG -22
Get sequence
|
|---|
| Mature sequence |
Ocu-Mir-935-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- CAGUUACCGCUUCCGCUACCGC -60
Get sequence
|
|---|
