| MirGeneDB ID | Obi-Novel-56 |
|---|
| Family name |
OCT-NOVEL-56 (all species) |
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| Seed |
GCCCUAU |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Ovu-Novel-56
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ420857: 10180-10240 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCUUUUAGGAAUCUAUUUUAGACACUGCUCUGCCCUAUAAAUGGUCCCCGUGUUAAUAUAUAUAUAACGGGAAUCACUUAUAUAGGGUGUAUGCCCUAUAAAUGGUCCCCGUGUUAAUAUAUAUAUAACGGGAAUCACUUAUAUAGGGUGUAGGAAUGUCUUUAUACACAACUUCUUGAAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCUUUUAGGAAUCUAUUUU--| CUG CUGCCCUAUAAAUGGUCCCCGUGUUAAUAU
AGACA CU A
UCUGU GG U
UAAAGUUCUUCAACACAUAUU^ AA- AUGUGGGAUAUAUUCACUAAGGGCAAUAUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Obi-Novel-56_5p* |
| mirBase accession | None |
|---|
| Sequence |
38- GGGAAUCACUUAUAUAGGGUGUA -61
Get sequence
|
|---|
| Mature sequence |
Obi-Novel-56_3p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCCCUAUAAAUGGUCCCCGU -21
Get sequence
|
|---|
