| MirGeneDB ID | Obi-Novel-11 |
|---|
| Family name |
CEP-NOVEL-11 (all species) |
|---|
| Seed |
GGUUUUG |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Npo-Novel-11
Ovu-Novel-11
|
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| Node of Origin (locus) |
Cephalopoda
|
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| Node of Origin (family) |
Cephalopoda
|
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Genome context
(PRJNA270931_OBI) |
KQ419141: 196735-196794 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCGAUAAUGUGAGCUUUGCCCCAGUGGAGCUGGUUUUGUGAGAUGUUCAUUGGUUACAUAAAAUAUUCAGUGACCAUCUCUAAAACUAACUUUCCUGGUGGUCAUAACAACUUCAUACAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCGAUAAUGUGAGCUUU- -| UG C U U UUACAU
GCC CCAG GAG UGGUUUUG GAGAUG UCAUUGG \
UGG GGUC UUC AUCAAAAU CUCUAC AGUGACU A
CACAUACUUCAACAAUAC U^ CU A - C UAUAAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Obi-Novel-11_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGGUUUUGUGAGAUGUUCAUUGG -23
Get sequence
|
|---|
| Star sequence |
Obi-Novel-11_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- AGUGACCAUCUCUAAAACUAAC -60
Get sequence
|
|---|
