| MirGeneDB ID | Npo-Mir-1-P20 |
|---|---|
| Family name | MIR-1 (all species) |
| Seed | GGAAUGU |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | Npo-Mir-1-P21 |
| Orthologues | Aae-Mir-1 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Cbr-Mir-1 Cel-Mir-1 Cgi-Mir-1 Cin-Mir-1 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dpu-Mir-1 Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Hme-Mir-1 Isc-Mir-1 Lan-Mir-1 Lgi-Mir-1 Obi-Mir-1 Ovu-Mir-1 Pfl-Mir-1 Pmi-Mir-1 Sko-Mir-1 Spu-Mir-1 Tca-Mir-1 Xbo-Mir-1 |
| Node of Origin (locus) | N. pompilius |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_018389105_NPO) |
JACATO010002176.1: 801170-801230 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | CAGGGACUACUCCUGUGCUGUGUGCACGAGACAUACUUCUUUACUAUCCCAUAGACUGUCACAAAAUUAUGGAAUGUAAAGAAGUAUGUAUUCUGUGCAUGGACUGACUUCAAUGCCGAUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 CAGGGACUACUCCUGUG--| UG C - U C GACUGU CUGUG CA GAG ACAUACUUCUUUAC AU CCAUA C GGUAC GU CUU UGUAUGAAGAAAUG UA GGUAU A GUAGCCGUAACUUCAGUCA^ GU - A - A UAAAAC . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Npo-Mir-1-P20_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACAUACUUCUUUACUAUCCCAUA -23
Get sequence
|
| Mature sequence | Npo-Mir-1-P20_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UGGAAUGUAAAGAAGUAUGUAU -61
Get sequence
|
