| MirGeneDB ID | Mun-Novel-2 |
|---|
| Family name |
AMP-NOVEL-2 (all species) |
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| Seed |
GAGGCUU |
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| Species |
Microcaecilia (Microcaecilia unicolor) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Xtr-Novel-2
|
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| Node of Origin (locus) |
Amphibia
|
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| Node of Origin (family) |
Amphibia
|
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Genome context
(Mun_miRNA_loci) |
Novel-2_NC_044033.1:484688944-484689087: 44-101 [-]
|
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Precursor
(pre-Mir +30nt flank) |
CCCGCUUCCAGCUAAUCAUUGAGGCUGCAUUGAGGCUUCCCACUUCAAGGCUGUGUUCUGACUCAUCCUGGAAGCUGGAAGCCUGGAUGCAUCCCCAAAGCAGAGCAAAAAGCAGCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCCGCUUCCAGCUAAUCA--| A C G CA A C UGUU
UUG GG UGCAUU AGGCUUCC CUUC AGG UG C
AAC CC ACGUAG UCCGAAGG GAAG UCC AC U
GUCGACGAAAAACGAGACGA^ C U G UC G U UCAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UGUG in loop |
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Tissue expression
|
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| Mature sequence |
Mun-Novel-2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGGCUUCCCACUUCAAGGCUG -23
Get sequence
|
|---|
| Star sequence |
Mun-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UCCUGGAAGCUGGAAGCCUGGAU -58
Get sequence
|
|---|
