| MirGeneDB ID | Mun-Novel-1 |
|---|
| Family name |
AMP-NOVEL-1 (all species) |
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| Seed |
AUCGCGU |
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| Species |
Microcaecilia (Microcaecilia unicolor) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Xla-Novel-1-P1
Xla-Novel-1-P2
Xtr-Novel-1
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| Node of Origin (locus) |
Amphibia
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| Node of Origin (family) |
Amphibia
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Genome context
(Mun_miRNA_loci) |
Novel-1_NC_044032.1:411974553-411974810: 101-158 [+]
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Precursor
(pre-Mir +30nt flank) |
CAAUCUUGCAUCGUUUACUGCUUCACGUUGCAUCGCGUUAACCGGAAGUCUCAUGUUUCACUAUGAGACUUCUGGAUGACACGACGUGAUGUGAUGUGGAAUGCCUCGAGAUACCAUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAAUCUUGCAUCGUUUA--|UG U UG A C A AUGUU
C C UCACGU C UCG GUUA CCGGAAGUCUC U
G G AGUGUA G AGC CAGU GGUCUUCAGAG C
GUACCAUAGAGCUCCGUAA^GU U GU C A A UAUCA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Mun-Novel-1_5p |
| mirBase accession | None |
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| Sequence |
0- CAUCGCGUUAACCGGAAGUCUC -22
Get sequence
|
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| Star sequence |
Mun-Novel-1_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- GACUUCUGGAUGACACGACGUG -58
Get sequence
|
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