MirGeneDB 2.1
MirGeneDB ID

Mmu-Mir-342

Family name MIR-342 (all species)
Seed CUCACAC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-342
Paralogues
Orthologues Bta-Mir-342  Cfa-Mir-342  Cpo-Mir-342  Dno-Mir-342  Ete-Mir-342  Hsa-Mir-342  Mml-Mir-342  Ocu-Mir-342  Rno-Mir-342 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)		 chr12: 108658638-108658704 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGCCAUCUGUGAAAAUGGGCUCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGUCAAUGGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCUGCUGAGCACCACCAGAACCAA
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Structure
        10           20        30        40          50        60    
UUUGCCAUCUGUGAAAAU---    U        G      UA--|     AUUGA      UGGUCA 
                     GGGC CAAGGUGA GGGUGC    UCUGUG     GGGACA      \
                     UCCG GUUCCACU CCCACG    AGACAC     CUCUGU      A
AACCAAGACCACCACGAGUCG    -        G      CUAA^     A----      UAAGGU 
     120       110        100        90        80            70
Deep sequencing
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CommentThe Drosha cut is supported by CAGE data (de Rie et al. 2017) although there is a second Drosha cut +1 on both the 5p and 3p arms and a second Dicer cut -4 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-342_5p*
mirBase accessionMIMAT0004653
Sequence 
0- AGGGGUGCUAUCUGUGAUUGAGGGACA -27
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Proposed targets microrna.org: MIMAT0004653
TargetScanVert: mmu-miR-342-5p
miRDB: MIMAT0004653
Mature sequence

Mmu-Mir-342_3p
mirBase accessionMIMAT0000590
Sequence 
42- UCUCACACAGAAAUCGCACCCGUCA -67
Get sequence
Proposed targets microrna.org: MIMAT0000590
TargetScanVert: mmu-miR-342-3p
miRDB: MIMAT0000590