MirGeneDB 2.1
MirGeneDB ID

Mmu-Mir-3109

Family name MIR-3109 (all species)
Seed AUGGAUG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-3109
Paralogues
Orthologues
Node of Origin (locus) M. musculus
Node of Origin (family) M. musculus
Genome context
(mm10)		 chr9: 69456958-69457017 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGUCAUCUGGCUCUCUGCCUGCUCCUGUAAAUGGAUGCGAUGGUUCCCAUGCUGUUCUGAGGCAGAGCUAGGGCCAUCUCAUCCAGAUACUGUGGAGAUGGUACAAGGCGCUUAGCACA
Get precursor sequence
Structure
        10        20          30        40        50        60
UCGUCAUCUGGCUCUCUG  UG    U--|  AA      C     UU   AU  UGUUCU 
                  CC  CUCC   GUA  UGGAUG GAUGG  CCC  GC      G
                  GG  GAGG   CAU  ACCUAC CUACC  GGG  CG      A
ACACGAUUCGCGGAACAU  UA    UGU^  AG      U     --   AU  AGACGG 
.       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-3109_5p
mirBase accessionMIMAT0014949
Sequence 
0- AAUGGAUGCGAUGGUUCCCAUGC -23
Get sequence
Proposed targets TargetScanVert: mmu-miR-3109-5p
miRDB: MIMAT0014949
Star sequence

Mmu-Mir-3109_3p*
mirBase accessionMIMAT0014950
Sequence 
39- UAGGGCCAUCUCAUCCAGAUA -60
Get sequence
Proposed targets TargetScanVert: mmu-miR-3109-3p
miRDB: MIMAT0014950