Mir-139

MirGeneDB ID

Mmu-Mir-139

Family name

MIR-139 (all species)

Seed

CUACAGU

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-139

Paralogues

Orthologues

Aca-Mir-139 Ami-Mir-139 Bta-Mir-139 Cfa-Mir-139 Cli-Mir-139 Cmi-Mir-139 Cpi-Mir-139 Cpo-Mir-139 Dno-Mir-139 Dre-Mir-139 Ete-Mir-139 Gja-Mir-139 Gmo-Mir-139 Hsa-Mir-139 Lch-Mir-139 Loc-Mir-139 Mal-Mir-139 Mdo-Mir-139 Mml-Mir-139 Mun-Mir-139 Oan-Mir-139 Ocu-Mir-139 Pbv-Mir-139 Rno-Mir-139 Sha-Mir-139 Spt-Mir-139 Sto-Mir-139 Tgu-Mir-139 Tni-Mir-139 Xla-Mir-139-P1 Xla-Mir-139-P2 Xtr-Mir-139

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Gnathostomata

Genome context
(mm10)

chr7: 101475382-101475440 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGGAGGCGCCAGGACAGGCGCAGGUGUAUUCUACAGUGCACGUGUCUCCAGUGUGGCUCGGAGGCUGGAGACGCGGCCCUGUUGGAGUAACAACUGAAGCCAGAGUCUUCGAAGGGUG

Get precursor sequence

Structure

        10        20          30         40        50         
UGGGAGGCGCCAGGACAG  G-   G  -      -|   U  A            GUGGC 
                  GC  CAG UG UAUUCU ACAG GC CGUGUCUCCAGU     \
                  CG  GUC AC AUGAGG UGUC CG GCGCAGAGGUCG     U
GUGGGAAGCUUCUGAGAC  AA   A  A      U^   C  -            GAGGC 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Mature sequence

Mmu-Mir-139_5p

mirBase accession

MIMAT0000656

Sequence

0- UCUACAGUGCACGUGUCUCCAGU -23

Get sequence

Proposed targets

microrna.org: MIMAT0000656
TargetScanVert: mmu-miR-139-5p
miRDB: MIMAT0000656

Star sequence

Mmu-Mir-139_3p*

mirBase accession

MIMAT0004662

Sequence

36- UGGAGACGCGGCCCUGUUGGAGU -59

Get sequence

Proposed targets

microrna.org: MIMAT0004662
TargetScanVert: mmu-miR-139-3p
miRDB: MIMAT0004662