| MirGeneDB ID | Mml-Mir-550-P1 |
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| Family name |
MIR-550 (all species) |
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| Seed |
GUGCCUG |
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| Species |
Rhesus monkey (Macaca mulatta) |
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| MiRBase ID |
|
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| Paralogues |
Mml-Mir-550-P2
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| Orthologues |
Hsa-Mir-550-P1
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| Node of Origin (locus) |
Catarrhini
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| Node of Origin (family) |
Catarrhini
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Genome context
(rheMac8_trace) |
3:84811000-84811400: 151-212 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUGGUAUUUUGAUGCUUUGCUGGCUGGUGCAGUGCCUGAGGGAGUAAGAGCCCUGUUGUUGUAAGAUAGUGUCCUACUCCCUCAGGCACAUCUCCAGCAAGUUCCUUGCUGUCCUCCAAUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUGGUAUUUUGAUGCUUU--| G UGCA A AG C UGUUGUU
GCU GCUGG GUGCCUGAGGGAGUA G C C \
UGA CGACC CACGGACUCCCUCAU C G G G
UUUAACCUCCUGUCGUUCCU^ A UCUA - CU U AUAGAAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Mir-550 was rejected in Fromm et al. (2015). |
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
| Bo |
Br |
Br |
Br |
He |
Ki |
Li |
Lu |
Ly |
Sk |
Sp |
Te |
Th |
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| Mature sequence |
Mml-Mir-550-P1_5p |
| mirBase accession | None |
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| Sequence |
0- AGUGCCUGAGGGAGUAAGAGCCC -23
Get sequence
|
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| Star sequence |
Mml-Mir-550-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- UGUCCUACUCCCUCAGGCACAUC -62
Get sequence
|
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