| MirGeneDB ID | Mal-Mir-727-P2-v2 |
|---|
| Family name |
MIR-727 (all species) |
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| Seed |
UUGAGGC |
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| Species |
Asian swamp eel (Monopterus albus) |
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| MiRBase ID |
|
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| Paralogues |
Mal-Mir-727-P2-v1
|
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| Orthologues |
Gmo-Mir-727-P2
Spt-Mir-727
Tni-Mir-727-P2-v1
Tni-Mir-727-P2-v2
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Osteichthyes
|
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Genome context
(GCA_001952655.1_M_albus_1.0_genomic) |
KV885007.1: 635643-635705 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGGACACCAAAUGUCCUGUAUGUCAUUUUCAGUCUUCAAUUCCUCCCAGCCCGUUACUAAGGAAACUGUGAGUUGAGGCGAGUUGAAGACUAAAAAUGCUGUACAGAUACAAGUAGCAGCUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGGACACCAAAUGUCCU--| U C CU - CCGUUACUAA
GUAUG CAUUUU AGUCUUCAAUUC CC CAGC \
CAUGU GUAAAA UCAGAAGUUGAG GG GUUG G
GGUCGACGAUGAACAUAGA^ C A C- A AGUGUCAAAG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Mal-Mir-727-P2-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUCUUCAAUUCCUCCCAGCCC -22
Get sequence
|
|---|
| Mature sequence |
Mal-Mir-727-P2-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
41- GUUGAGGCGAGUUGAAGACUAA -63
Get sequence
|
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