| MirGeneDB ID | Lpo-Novel-1 |
|---|
| Family name |
LPO-NOVEL-1 (all species) |
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| Seed |
CCUCUAC |
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| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. polyphemus
|
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| Node of Origin (family) |
L. polyphemus
|
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Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013665688.1: 595096-595157 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUCAGAGCCGUUCUGGCCAGUUGUACUUAUUCCUCUACCUUGUGCGGCAGACAGUUGUUUACUUUAUUGUCUGUCCACAGGUCUAGGGGGCAGGGACUGGCUCAACCAGUUGUAAGAAACAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUCAGAGCCGUUCUGGC------| GUA AU C- C GUUGUU
CAGUU CUU UCCUCUA CUUGUG GGCAGACA U
GUCAG GGA GGGGGAU GGACAC CUGUCUGU A
GACAAAGAAUGUUGACCAACUCG^ --- C- CU - UAUUUC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Lpo-Novel-1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCCUCUACCUUGUGCGGCAGACA -23
Get sequence
|
|---|
| Star sequence |
Lpo-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- UCUGUCCACAGGUCUAGGGGGCA -62
Get sequence
|
|---|
