| MirGeneDB ID | Loc-Novel-4 |
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| Family name |
LOC-NOVEL-4 (all species) |
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| Seed |
GAAUGUC |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. oculatus
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| Node of Origin (family) |
L. oculatus
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Genome context
(LepOcu1) |
LG21: 5365345-5365401 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCAAUUAUGUCAAAAUGCAAUGCACUGAAGGACCAGAAAUGAGACACUCGUAUUUGGAGCAUAUAUGAAUGUCUCACUUCUGCACCUUUAGUGGUGACGGUAAGGGCUAGUAUUUAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCAAUUAUGUCAAAAUGCAAUG--| AC A C UUUGG
CACUGAAGG CAGAA UGAGACA UCGUA \
GUGAUUUCC GUCUU ACUCUGU AGUAU A
UAUUUAUGAUCGGGAAUGGCAGUG^ AC C A AUACG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Novel-4_5p* |
| mirBase accession | None |
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| Sequence |
0- GACCAGAAAUGAGACACUCGUA -22
Get sequence
|
|---|
| Mature sequence |
Loc-Novel-4_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UGAAUGUCUCACUUCUGCACCU -57
Get sequence
|
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