MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-92-P1a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-92-P1d  Loc-Mir-92-P2c  Loc-Mir-92-P2d 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Hsa-Mir-92-P1a  Isc-Mir-92  Lch-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xtr-Mir-92-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG17: 12376738-12376796 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCAGUGGUUCAGGGGUCCCUUUCUGUGCAGGUUGGGAUCAGUUGCAGUGCUGUUUAUUUGUAAGGUAUUGCACUUGUCCCGGCCUGUUGAGGACUAAGGGAAUUAAGCCACAAUUUU
Get precursor sequence
Structure
        10        20           30        40        50         
UUGCAGUGGUUCAGGGGUC    --   GU-|           C   U        GUUUA 
                   CCUU  UCU   GCAGGUUGGGAU AGU GCAGUGCU     U
                   GGAA  AGG   UGUCCGGCCCUG UCA CGUUAUGG     U
UUUUAACACCGAAUUAAG-    UC   AGU^           U   -        AAUGU 
       110        100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-92-P1a_5p*
mirBase accessionNone
Sequence 
0- AGGUUGGGAUCAGUUGCAGUGCU -23
Get sequence
Mature sequence

Loc-Mir-92-P1a_3p
mirBase accessionNone
Sequence 
37- UAUUGCACUUGUCCCGGCCUGU -59
Get sequence