MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-208-P1e

Family name MIR-208 (all species)
Seed UAAGACG
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-208-P1c  Loc-Mir-208-P1d 
Orthologues Bta-Mir-208-P1  Cfa-Mir-208-P1  Cpo-Mir-208-P1  Dno-Mir-208-P1  Dre-Mir-208-P1  Ebu-Mir-208-o1  Gmo-Mir-208-P1  Hsa-Mir-208-P1  Lch-Mir-208-P1  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1  Mmu-Mir-208-P1  Mun-Mir-208-P1  Ocu-Mir-208-P1  Rno-Mir-208-P1  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) L. oculatus
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 JH591418.1: 156141-156196 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGGUGCUGUUUCAUUUCUUCUAACAGAUAAGCUUUUUGUUUGCGUUAUGUUUAAAUUAGAAUAUAAGACGAACAAAAAGUUUGUCUGUUUGCAGACUGUACGACUGUGCGUGUG
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Structure
        10          20        30        40        50       
AAAGGUGCUGUUUCAUU--|  UCU                     CG      UUAA 
                   UCU   AACAGAUAAGCUUUUUGUUUG  UUAUGU    A
                   AGA   UUGUCUGUUUGAAAAACAAGC  AAUAUA    U
GUGUGCGUGUCAGCAUGUC^  CGU                     AG      AGAU 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-208-P1e_5p*
mirBase accessionNone
Sequence 
0- AAGCUUUUUGUUUGCGUUAUGU -22
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Mature sequence

Loc-Mir-208-P1e_3p
mirBase accessionNone
Sequence 
34- AUAAGACGAACAAAAAGUUUGU -56
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